TRES : k-tuple search
Results of TRES: K-tuple Search
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The sequences submitted by you.....
Sequence Seq-length Location of TATA-BOX relative to end of sequence
S79457 Human 400 -96
S79462 Mouse 400 -101
M17247 Mole-Ra 400 -91
M17627 Chicken 400 -110
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Site locations are relative to............. TATA-BOX
Sites are reported only if present in
a minimum of............................. 4 out of total 4 sequences
Mismatches allowed are at most............. 1 in 10 bases
( * indicate mismatch )
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The k-tuple size is........................ 10
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10-tuple->> CTGCCCAGTG ( compli. sequence.. CACTGGGCAG )
S79457 Human -267 CTGCCCAGTG
S79462 Mouse 37 CTGCCCAGAG*
M17247 Mole-Rat -129 CTGCTCAGTG*
M17627 Chicken
on-compli-strand-> -186 CTGCCCAGGG* 27 CTGCACAGTG*
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10-tuple->> CCTGGGGCTG ( compli. sequence.. CAGCCCCAGG )
S79457 Human -116 CCTGGGGCTG
on-compli-strand-> -180 CCTGGGGCTC*
S79462 Mouse -112 GCTGGGGCTG*
M17247 Mole-Rat -113 CCTGGGGCTG
M17627 Chicken
on-compli-strand-> -106 CCTGGGGATG*
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10-tuple->> CTGGGGCTGG ( compli. sequence.. CCAGCCCCAG )
S79457 Human -115 CTGGGGCTGG
S79462 Mouse -111 CTGGGGCTGG
M17247 Mole-Rat -112 CTGGGGCTGG
M17627 Chicken -131 CTGGCGCTGG*
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10-tuple->> GGGGCTGGGG ( compli. sequence.. CCCCAGCCCC )
S79457 Human -113 GGGGCTGGGG
S79462 Mouse -109 GGGGCTGGGC*
M17247 Mole-Rat -110 GGGGCTGGGG
M17627 Chicken -281 AGGGCTGGGG*
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10-tuple->> GAGAAATCCC ( compli. sequence.. GGGATTTCTC )
S79457 Human -36 GAGAAATCCC
S79462 Mouse -35 GGGAAATCCC*
M17247 Mole-Rat -37 GTGAAATCCC*
M17627 Chicken -39 GAGAAATCCC
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10-tuple->> AGAAATCCCT ( compli. sequence.. AGGGATTTCT )
S79457 Human -35 AGAAATCCCT
S79462 Mouse -34 GGAAATCCCT*
M17247 Mole-Rat -36 TGAAATCCCT*
M17627 Chicken -241 AGACATCCCT* -38 AGAAATCCCA*
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10-tuple->> GAAATCCCTT ( compli. sequence.. AAGGGATTTC )
S79457 Human -34 GAAATCCCTT
S79462 Mouse -33 GAAATCCCTT
M17247 Mole-Rat -35 GAAATCCCTT
M17627 Chicken -240 GACATCCCTT*
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10-tuple->> AAATCCCTTA ( compli. sequence.. TAAGGGATTT )
S79457 Human -33 AAATCCCTTA
S79462 Mouse -32 AAATCCCTTA
M17247 Mole-Rat -34 AAATCCCTTA
M17627 Chicken -239 ACATCCCTTA*
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10-tuple->> GCATATATAG ( compli. sequence.. CTATATATGC )
S79457 Human -3 GCATATATAG
S79462 Mouse -3 GCATATATAG
M17247 Mole-Rat -5 GCGTATATAG*
M17627 Chicken -3 GTATATATAG*
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10-tuple->> CATATATAGG ( compli. sequence.. CCTATATATG )
S79457 Human -2 CATATATAGG
S79462 Mouse -2 CATATATAGG
M17247 Mole-Rat -4 CGTATATAGG*
M17627 Chicken -2 TATATATAGG*
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10-tuple->> ATATATAGGG ( compli. sequence.. CCCTATATAT )
S79457 Human -1 ATATATAGGG
S79462 Mouse -1 ATATATAGGG
M17247 Mole-Rat -3 GTATATAGGG*
M17627 Chicken -1 ATATATAGGG
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10-tuple->> TATATAGGGA ( compli. sequence.. TCCCTATATA )
S79457 Human 0 TATATAGGGA
S79462 Mouse 0 TATATAGGGA
M17247 Mole-Rat -2 TATATAGGGA
M17627 Chicken 0 TATATAGGGG*
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10-tuple->> GCCTCTGCTG ( compli. sequence.. CAGCAGAGGC )
S79457 Human -158 GCCTCAGCTG*
S79462 Mouse -135 GCCTCTGCTG
M17247 Mole-Rat -136 GCCCCTGCTG*
M17627 Chicken
on-compli-strand-> 39 GCCTTTGCTG*
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10-tuple->> CCTCCATTCT ( compli. sequence.. AGAATGGAGG )
S79457 Human -20 CCGCCATTCT*
S79462 Mouse -19 CCTCCATTCT
M17247 Mole-Rat -21 CCTCCATTCT
M17627 Chicken -22 CCTTCATTCT*
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10-tuple->> CTCCATTCTG ( compli. sequence.. CAGAATGGAG )
S79457 Human -19 CGCCATTCTG*
S79462 Mouse -18 CTCCATTCTG
M17247 Mole-Rat -20 CTCCATTCTG
M17627 Chicken -21 CTTCATTCTG*
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10-tuple->> GGGAGGGCTG ( compli. sequence.. CAGCCCTCCC )
S79457 Human 6 GGGAGGGCTC*
S79462 Mouse 6 GGGAGGGCTG
M17247 Mole-Rat
on-compli-strand-> -184 TGGAGGGCTG*
M17627 Chicken
on-compli-strand-> 10 GGGAAGGCTG*
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10-tuple->> GGAGGGCTGG ( compli. sequence.. CCAGCCCTCC )
S79457 Human 7 GGAGGGCTCG*
S79462 Mouse 7 GGAGGGCTGG
M17247 Mole-Rat
on-compli-strand-> -185 GGAGGGCTGT*
M17627 Chicken -283 CGAGGGCTGG*
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10-tuple->> GCCAGCCTTC ( compli. sequence.. GAAGGCTGGC )
S79457 Human 59 GCCAGCCTCC*
S79462 Mouse 65 GCCAGCCTTC
M17247 Mole-Rat 56 ACCAGCCTTC*
M17627 Chicken 8 GGCAGCCTTC*
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10-tuple->> TGCTGCTGAC ( compli. sequence.. GTCAGCAGCA )
S79457 Human -80 TTCTGCTGAC*
S79462 Mouse -82 AGCTGCTGAC*
M17247 Mole-Rat -84 TGCTGCTGAC
M17627 Chicken -83 TTCTGCTGAC*
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10-tuple->> CTGCTGACCG ( compli. sequence.. CGGTCAGCAG )
S79457 Human -78 CTGCTGACTG*
S79462 Mouse -80 CTGCTGACGG*
M17247 Mole-Rat -82 CTGCTGACCG
M17627 Chicken -81 CTGCTGACCA*
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10-tuple->> TAATGCCTCC ( compli. sequence.. GGAGGCATTA )
S79457 Human -25 TAATGCCGCC*
S79462 Mouse -24 TAATTCCTCC*
M17247 Mole-Rat -26 TAATGCCTCC
M17627 Chicken -27 TAATGCCTTC*
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10-tuple->> AATGCCTCCA ( compli. sequence.. TGGAGGCATT )
S79457 Human -24 AATGCCGCCA*
S79462 Mouse -23 AATTCCTCCA*
M17247 Mole-Rat -25 AATGCCTCCA
M17627 Chicken -26 AATGCCTTCA*
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10-tuple->> ATGCCTCCAT ( compli. sequence.. ATGGAGGCAT )
S79457 Human -23 ATGCCGCCAT*
S79462 Mouse -22 ATTCCTCCAT*
M17247 Mole-Rat -24 ATGCCTCCAT
M17627 Chicken -25 ATGCCTTCAT*
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10-tuple->> TGCCTCCATT ( compli. sequence.. AATGGAGGCA )
S79457 Human -22 TGCCGCCATT*
S79462 Mouse -21 TTCCTCCATT*
M17247 Mole-Rat -23 TGCCTCCATT
M17627 Chicken -24 TGCCTTCATT*
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10-tuple->> GCCTCCATTC ( compli. sequence.. GAATGGAGGC )
S79457 Human -21 GCCGCCATTC*
S79462 Mouse -20 TCCTCCATTC*
M17247 Mole-Rat -22 GCCTCCATTC
M17627 Chicken -23 GCCTTCATTC*
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10-tuple->> GAGGGCTGGG ( compli. sequence.. CCCAGCCCTC )
S79457 Human 8 GAGGGCTCGG*
S79462 Mouse 8 GAGGGCTGGA*
M17247 Mole-Rat
on-compli-strand-> -186 GAGGGCTGTG*
M17627 Chicken -282 GAGGGCTGGG
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Total k-tuples searched = 1560
Total k-tuples conserved = 26
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TRES : Transcription Regulatory Element Search
Division of Biochemical Sciences, National Chemical Laboratory, Pune 411008, INDIA