TRES : TRANSFAC Matrix Scan

 
  Results of TRES : Transfac  Matrix Scan 
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  The sequences submitted by you..... 
 
  Sequence      Seq-length   Location of TATA-BOX relative to end of sequence 

  S79457 Human      400           -96  
  S79462 Mouse      400          -101  
  M17247 Mole-Ra    400           -91  
  M17627 Chicken    400          -110  
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  Site locations are relative to.............     TATA-BOX  
  Sites are reported only if present in  
    a minimum of.............................     4 out of total 4 sequences
  Matrix cut-off score is....................     90      
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  Values in the bracket indicate observed matrix similarity score 
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 TRANSFAC_matrix_acc_no...  M00027 
 Matrix_consensus_sequence  YNNNYYNCATTCCNNNNNN 
 Matrix_defination........  __AbaA  
 
  S79457 Human         -23( 91.5)   
  S79462 Mouse         -95( 93.8)     -22( 93.6)   
  M17247 Mole-Rat      -24( 93.5)   
  M17627 Chicken       -25( 93.7)  

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 TRANSFAC_matrix_acc_no...  M00175 
 Matrix_consensus_sequence  NNCAGCTGNN 
 Matrix_defination........  __activator_protein_4  
 
  S79457 Human        -156( 99.3)  
    (compli-strand)    -80( 93.6)     -14( 91.7)      45( 94.2)   
  S79462 Mouse         -85( 95.7)  
    (compli-strand)   -133( 93.1)     -82( 94.0)     -57( 94.9)   
  M17247 Mole-Rat     -309( 90.1)      31( 90.4)  
    (compli-strand)   -134( 93.6)     -87( 93.6)     -84( 93.6)     -59( 94.6)   
  M17627 Chicken      -219( 93.6)  
    (compli-strand)   -230( 90.1)     -83( 93.6)  

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 TRANSFAC_matrix_acc_no...  M00184 
 Matrix_consensus_sequence  NNCANCTGNY 
 Matrix_defination........  __myoblast_determining_factor  
 
  S79457 Human        -156( 91.3)    -100( 90.0)  
    (compli-strand)   -254( 98.3)   
  S79462 Mouse        -279( 93.1)    -151( 95.4)     -85( 96.0)   
  M17247 Mole-Rat     -295( 92.0)    -156( 91.6)   
  M17627 Chicken    
    (compli-strand)   -204( 91.5)  

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 TRANSFAC_matrix_acc_no...  M00222 
 Matrix_consensus_sequence  NNNNGNRTCTGGMWTT 
 Matrix_defination........  __Thing1/E47_heterodimer  
 
  S79457 Human      
    (compli-strand)    -43( 90.1)      34( 93.2)   
  S79462 Mouse        -154( 90.9)   
  M17247 Mole-Rat     -159( 92.9)   
  M17627 Chicken      -139( 92.6)  
    (compli-strand)   -247( 91.7)    -207( 91.5)    -119( 90.9)     -46( 90.1)  

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 TRANSFAC_matrix_acc_no...  M00277 
 Matrix_consensus_sequence  SNNCAGGTGNNN 
 Matrix_defination........  __complex_of_Lmo2_bound_to_Tal-1,_E2A_proteins,_and_GATA-1,_half-site_1  
 
  S79457 Human        -255( 90.2)    -157( 93.1)  
    (compli-strand)   -101( 90.9)   
  S79462 Mouse         -86( 94.8)  
    (compli-strand)   -280( 97.1)    -152( 92.2)   
  M17247 Mole-Rat   
    (compli-strand)   -296( 93.1)    -157( 91.8)   
  M17627 Chicken      -205( 90.4)  

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 Number of matrices scanned..............    222   
 Number of matrices conserved............    5     
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