TRES : TRANSFAC Site Search

 
  Results of scanning for Transcription Factor Binding sites taken from 
   TRANSFAC database   
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  The sequences submitted by you..... 
 
  Sequence      Seq-length   Location of TATA-BOX relative to end of sequence 

  S79457 Human      400           -96  
  S79462 Mouse      400          -101  
  M17247 Mole-Ra    400           -91  
  M17627 Chicken    400          -110  
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  Site locations are relative to.............     TATA-BOX  
  Sites are reported only if present in  
    a minimum of.............................     4 out of total 4 sequences
  Mismatches allowed are at most.............     1 in 10 bases    
    ( * indicate mismatch ) 
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  TRANSFAC site name.....     R00680 HS$HH4 01  
  Site consensus sequence     GATTTC. 
 
  S79457 Human                
     on-compli-strand->         -34    
  S79462 Mouse                
     on-compli-strand->         -33    
  M17247 Mole-Rat             
     on-compli-strand->         -35    
  M17627 Chicken              
     on-compli-strand->         -37    

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  TRANSFAC site name.....     R01540 PIG$UPA 09  
  Site consensus sequence     GGGCAG. 
 
  S79457 Human                
     on-compli-strand->        -267    
  S79462 Mouse                 -103    
     on-compli-strand->          37    
  M17247 Mole-Rat              -264    
     on-compli-strand->          42    
  M17627 Chicken               -182        7    

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  TRANSFAC site name.....     R02115 AACRYBP1$CONS 01  
  Site consensus sequence     GGGAAATCCC. 
 
  S79457 Human                  -36 *  
  S79462 Mouse                  -35    
  M17247 Mole-Rat               -37 *  
  M17627 Chicken                -39 *  

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  TRANSFAC site name.....     R02121 AP2$CONS 01  
  Site consensus sequence     CCCMNSSS. 
 
  S79457 Human                 -270     -230     -177     -167    
     on-compli-strand->        -112     -111    
  S79462 Mouse                
     on-compli-strand->        -108    
  M17247 Mole-Rat                39    
     on-compli-strand->        -114     -109     -108    
  M17627 Chicken               -187       17    
     on-compli-strand->        -280     -279     -187    

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  TRANSFAC site name.....     R03779 ABAA$CONS 01  
  Site consensus sequence     CATTCY. 
 
  S79457 Human                  -16    
  S79462 Mouse                  -88      -15    
  M17247 Mole-Rat               -17    
  M17627 Chicken                -18    

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  TRANSFAC site name.....     R04166 HS$IGKL 11  
  Site consensus sequence     CATCTG. 
 
  S79457 Human                
     on-compli-strand->        -252    
  S79462 Mouse                 -149    
  M17247 Mole-Rat              -293     -154    
  M17627 Chicken              
     on-compli-strand->        -202    

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 Total Sites searched   =  3980 
 Total Sites conserved  =  6 
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