TRES : ooTFD Site Search

 
  Results of scanning for Transcription Factor Binding sites taken from 
   ooTFD database 
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  The sequences submitted by you..... 
 
  Sequence      Seq-length   Location of TATA-BOX relative to end of sequence 

  S79457 Human      400           -96  
  S79462 Mouse      400          -101  
  M17247 Mole-Ra    400           -91  
  M17627 Chicken    400          -110  
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  Site locations are relative to.............     TATA-BOX  
  Sites are reported only if present in  
    a minimum of.............................     4 out of total 4 sequences
  Mismatches allowed are at most.............     1 in 10 bases    
    ( * indicate mismatch ) 
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  ooTFD site name........     S00081 NFkB CS1     
  Site consensus sequence     GGGRHTYYHC 
 
  S79457 Human                
     on-compli-strand->         -36    
  S79462 Mouse                
     on-compli-strand->         -35    
  M17247 Mole-Rat             
     on-compli-strand->         -37    
  M17627 Chicken              
     on-compli-strand->         -39    

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  ooTFD site name........     S00741 H4TF-1hist     
  Site consensus sequence     GATTTC 
 
  S79457 Human                
     on-compli-strand->         -34    
  S79462 Mouse                
     on-compli-strand->         -33    
  M17247 Mole-Rat             
     on-compli-strand->         -35    
  M17627 Chicken              
     on-compli-strand->         -37    

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  ooTFD site name........     S01139 H2A conserved US     
  Site consensus sequence     YCATTC 
 
  S79457 Human                  -17    
  S79462 Mouse                  -16    
  M17247 Mole-Rat               -18    
  M17627 Chicken                -19    

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  ooTFD site name........     S01486 NFkB-IL2     
  Site consensus sequence     GGGATTTCAC 
 
  S79457 Human                
     on-compli-strand->         -36 *  
  S79462 Mouse                
     on-compli-strand->         -35 *  
  M17247 Mole-Rat             
     on-compli-strand->         -37    
  M17627 Chicken              
     on-compli-strand->         -39 *  

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  ooTFD site name........     S01544 AP-2 CS5     
  Site consensus sequence     GSSWGSCC 
 
  S79457 Human                 -182     -172    
  S79462 Mouse                
     on-compli-strand->        -103    
  M17247 Mole-Rat             
     on-compli-strand->        -264    
  M17627 Chicken              
     on-compli-strand->           7    

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  ooTFD site name........     S01658 NFkB-APRE     
  Site consensus sequence     GGGAAATCCC 
 
  S79457 Human                  -36 *  
  S79462 Mouse                  -35    
  M17247 Mole-Rat               -37 *  
  M17627 Chicken                -39 *  

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  ooTFD site name........     S03106 3' enhancer/HM     
  Site consensus sequence     CATCTG 
 
  S79457 Human                
     on-compli-strand->        -252    
  S79462 Mouse                 -149    
  M17247 Mole-Rat              -293     -154    
  M17627 Chicken              
     on-compli-strand->        -202    

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  ooTFD site name........     S04920 abaA-consensus     
  Site consensus sequence     CATTCY 
 
  S79457 Human                  -16    
  S79462 Mouse                  -88      -15    
  M17247 Mole-Rat               -17    
  M17627 Chicken                -18    

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  ooTFD site name........     S05470 AP-2 beta CS     
  Site consensus sequence     SCCNNNGGC 
 
  S79457 Human                   37    
     on-compli-strand->        -231     -178     -141       37    
  S79462 Mouse                   40    
  M17247 Mole-Rat              -114    
  M17627 Chicken               -285     -187    
     on-compli-strand->        -285     -188    

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  ooTFD site name........     S05817 AlphaCE2Maf-Bfsp1     
  Site consensus sequence     TGCTGAC 
 
  S79457 Human                  -77    
  S79462 Mouse                  -79    
  M17247 Mole-Rat               -81    
  M17627 Chicken                -80    

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  ooTFD site name........     S05935 AP-2/ Sp1 site     
  Site consensus sequence     CCTCCC 
 
  S79457 Human                 -188    
     on-compli-strand->           6    
  S79462 Mouse                
     on-compli-strand->           6    
  M17247 Mole-Rat               -67    
     on-compli-strand->        -203        4    
  M17627 Chicken               -248    

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  ooTFD site name........     S05972 Sp1-erk1 (1)     
  Site consensus sequence     GGGAGG 
 
  S79457 Human                    6    
     on-compli-strand->        -188    
  S79462 Mouse                    6    
  M17247 Mole-Rat              -203        4    
     on-compli-strand->         -67    
  M17627 Chicken              
     on-compli-strand->        -248    

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 Total Sites searched   =  5919 
 Total Sites conserved  =  12 
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